David Benjamin Blumenthal

79 to 83 of 83

29MAR 2021
Benchmarking and Bias Mitigation
Test Suite for Active Module Identification Methods
A Python suite for testing the functional relevance of the results produced by active module identification methods, as well as their robustness to random pertubations of the employed protein-protein interaction networks.
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12DEC 2020
Network Exploration and Disease Module Mining
BiCoN
BiCoN allows to stratify patients while elucidating disease mechanisms. BiCoN is a network-constrained biclustering approach, which restricts biclusters to functionally related genes connected in molecular networks and maximizes the expression difference between two groups of patients.
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12JUN 2020
Network Exploration and Disease Module Mining
CoVex
CoVex is a unique online network and systems medicine platform for data analysis that integrates virus-human interactions for SARS-CoV-2 and SARS-CoV-1. It implements different network-based approaches for the identification of new drug targets and new repurposable drugs.
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14APR 2020
Epistasis
EpiGEN
EpiGEN is an easy-to-use epistasis simulation pipeline written in Python. It supports epistasis models of arbitrary size, the specification of the minor allele frequencies for both noise and disease SNPs, and the simulation of observation bias.
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16MAY 2019
Miscellaneous
GEDLIB
GEDLIB is an easily extensible C++ library for (suboptimally) computing the graph edit distance (GED) between two labeled graphs. GEDLIB implements more than thirty state-of-the-art methods for computing GED and comes with predefined edit costs for some benchmark datasets.
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