Author: David Blumenthal

BoostDiff is a Python tool to infer differential gene regulatory networks from gene expression data.

Category: Software

Our Python test suite confinspect allows to assess the effect of demographic confounders such as sex and age on methods for inferring gene regulatory and gene co-expression networks.

Category: Software

In our paper "Inference of differential gene regulatory networks using boosted differential trees", we present BoostDiff, a tree-based method for identifying differences in transcriptional regulation between two conditions.

Category: News

In our paper "Cracking the black box of deep sequence-based protein-protein interaction prediction", we show that the near-perfect performances reported for deep learning methods for PPI prediction can be entirely attributed to data leakage.

Category: News

GraphSimViz is a web service for quantification of biases phenotype-based disease definitions introduce in disease association data.

Category: Software

We're happy to announce that Anne has received funding from FAU's Emerging Talents Initiative for her project "CAB: Carbon-aware bioinformatics". She'll develop tools to automatically shift CO2-intensive computations to time slots when green energy is available.

Category: News