Software

Browse all posts in the Software category.

13 to 18 of 25

18MAY 2023
Miscellaneous
CorrNet
CorrNet is a Python package for the analysis of historical correspondence networks.
Read more about CorrNet
03MAY 2023
Network Inference
TF-Prioritizer
TF-Prioritizer is an automated pipeline that prioritizes condition-specific transcription factors from multimodal data and generates an interactive web report. It accepts ATAC, DNase, or ChIP sequencing and RNA sequencing data as input and identifies TFs with differential activity
Read more about TF-Prioritizer
27JUN 2022
Benchmarking and Bias Mitigation
DIGEST
DIGEST is a systems medicine tool for the in silico validation of gene and disease sets, clusterings, and subnetworks w.r.t. genetic and functional coherence. It is available as a web service, as a Python package, and via a REST API.
Read more about DIGEST
04JAN 2022
Network Exploration and Disease Module Mining
ROBUST
ROBUST is a Python tool which uses enumeration of diverse prize-collecting Steiner trees to compute disease modules that are robust to random bias.
Read more about ROBUST
07DEC 2021
Federated Learning
Fever-PCA
Fever-PCA (federated principal component analysis for vertically partitioned data) is a federated, privacy-preserving tool for principal component analysis, including patient stratification and dimensionality reduction.
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22NOV 2021
Federated Learning
Flimma
Flimma is a privacy-preserving hybrid federated tool for differential gene expression analysis. Flimma by design preserves the privacy of the local data, since the expression profiles never leave the local execution sites and shared meta-parameters are protected via secure multi-party computation.
Read more about Flimma